SNP-finding in pig mitochondrial ESTs
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SNP-finding in pig mitochondrial ESTs. / Scheibye-Alsing, Karsten; Cirera Salicio, Susanna; Gilchrist, M.J.; Fredholm, Merete; Gorodkin, Jan.
I: Animal Genetics, Bind 39, Nr. 2, 2008, s. 193-195.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - SNP-finding in pig mitochondrial ESTs
AU - Scheibye-Alsing, Karsten
AU - Cirera Salicio, Susanna
AU - Gilchrist, M.J.
AU - Fredholm, Merete
AU - Gorodkin, Jan
PY - 2008
Y1 - 2008
N2 - The Sino-Danish pig genome project produced 685 851 ESTs (Gorodkin et al. 2007), of which 41 499 originated from the mitochondrial genome. In this study, the mitochondrial ESTs were assembled, and 374 putative SNPs were found. Chromatograms for the ESTs containing SNPs were manually inspected, and 112 total (52 non-synonymous) SNPs were found to be of high confidence (five of them are close to disease-causing SNPs in humans). Nine of the high-confidence SNPs were tested experimentally, and eight were confirmed. The SNPs can be accessed online at http://pigest.ku.dk/more.mito
AB - The Sino-Danish pig genome project produced 685 851 ESTs (Gorodkin et al. 2007), of which 41 499 originated from the mitochondrial genome. In this study, the mitochondrial ESTs were assembled, and 374 putative SNPs were found. Chromatograms for the ESTs containing SNPs were manually inspected, and 112 total (52 non-synonymous) SNPs were found to be of high confidence (five of them are close to disease-causing SNPs in humans). Nine of the high-confidence SNPs were tested experimentally, and eight were confirmed. The SNPs can be accessed online at http://pigest.ku.dk/more.mito
KW - Former LIFE faculty
KW - expressed sequence tags
KW - mitochondrial
KW - pig
KW - single nucleotide polymorphisms
U2 - 10.1111/j.1365-2052.2007.01694.x
DO - 10.1111/j.1365-2052.2007.01694.x
M3 - Journal article
C2 - 18261187
VL - 39
SP - 193
EP - 195
JO - Animal Genetics
JF - Animal Genetics
SN - 0268-9146
IS - 2
ER -
ID: 8104862